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=== [[Lab Floor Plan (with list of materials)]] === | |||
== General microbiology protocols == | |||
===[[Media Recipes]]=== | |||
===[[Reagent Recipes]]=== | |||
===[[Working with Antibiotics]]=== | |||
===[[Freezing -80 Stocks]]=== | |||
===[[Freezing Aliquots]]=== | |||
===[[Competition Assays]]=== | |||
===[[Generic PCR]]=== | |||
===[[Gradient PCR]]=== | |||
===[[Running DNA Gels]]=== | |||
===[[Protein Purification]]=== | |||
===[[Protein Sample Concentration]]=== | |||
== Cloning and gene manipulation == | |||
===[[Commonly Used Plasmids]]=== | |||
===[[Plasmid Purification]]=== | |||
===[[Digest and Ligation]]=== | |||
===[[Gel Purification]]=== | |||
===[[Creating Competent E. coli Cells]]=== | |||
===[[Transformation]]=== | |||
===[[Transformation — non-competent E. coli]]=== | |||
===[[Gibson Assembly]]=== | |||
===[[Qubit dsDNA Broad Range Assay]]=== | |||
===[[Preparing Sanger Sequencing (Eurofins)]]=== | |||
===[[Preparing Plasmid Sequencing (plasmidsaurus)]]=== | |||
===[[Creating Lac- E. coli Mutants]]=== | |||
== ''Arabidopsis thaliana'' protocols == | |||
===[[Creating Sterile Agar Plates]]=== | |||
===[[Sterile Seeding Protocol]]=== | |||
===[[Germination Protocol for ''Arabidopsis thaliana'' Seeds in Non-Sterile Experiments]]=== | |||
===[[Growth Stage Phenotype Definitions]]=== | |||
===[[Growth Conditions for ''Arabidopsis thaliana'']]=== | |||
===[[Measuring Light with HOBO Data Loggers]]=== | |||
===[[Inoculation of ''Arabidopsis thaliana'' with Microbes]]=== | |||
===[[Removal and DNA Extraction of Phyllosphere Microbes]]=== | |||
===[[ARISA]]=== | |||
===[[Measuring ''A. thaliana'' Phenotype using FIJI by Hand]]=== | |||
===[[DNeasy PowerSoil Protocol]]=== | |||
===[[Fiji Measurement]]=== | |||
===[[Making Boxes]]=== | |||
===[[Growing ''A. thaliana'' for Seed Harvest]]=== | |||
===[[Growing ''A. thaliana'' in Cut Pipet Tips]]=== | |||
== ''Streptococcus pneumoniae'' protocols == | |||
===[[Dual Layer Assays]]=== | |||
===[[Streptococcus DNA Extraction]]=== | |||
===[[Streptococcus CRISPR-Cas9 Editing]]=== | |||
===[[Streptococcus Transformation]]=== | |||
===[[Streptococcus Growth Curve Protocol]]=== | |||
===[[Streptococcus Growth Curve and Cell Count in Liquid Media]]=== | |||
===[[Log Phase Growth Curve and Cell Count in Liquid Media]]=== | |||
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Original]]=== | |||
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Early Producer]]=== | |||
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Light and Normal Target Lawns]]=== | |||
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Finding Producer-Resistant Target Bacteria]]=== | |||
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Finding Producer-Resistant Target Bacteria (6-well plate version)]]=== | |||
== ''Streptococcus suis'' protocols == | |||
===[[Streptococcus suis Transformation]]=== | |||
===[[Measuring Absorbance in Streptococcus]]=== | |||
===[[Streptococcus DNA Extraction]]=== | |||
===[[Streptococcus Competence Induction]]=== | |||
===[[Peptide Synthesis]]=== | |||
===[[Peptide Cleavage]]=== | |||
===[[Mass Spectrometery]]=== | |||
===[[Plate Reader Assay and Growth Curve]]=== | |||
===[[Measuring Competence : Fixation and Flow Cytometry]]=== | |||
== ''Streptococcus mutans'' protocols == | |||
===[[Streptococcus mutans Growth]]=== | |||
===[[Streptococcus mutans Transformation]]=== | |||
== [[Interactions Protocols]] == | |||
===[[Zone of Inhibition Assay]]=== | |||
== [[Remote Molecular Biology]] == | |||
== [[Effect of Laboratory Protocols on Student Learning]] == | |||
== Interesting Podcasts to Listen to When Doing Lab Work! == | |||
This Week in Microbiology | |||
By Vincent Racaniello | |||
5 stars! Amazing podcast to learn all about different types of microbiology research! This podcast goes pretty in depth into different current scientific papers so it is a great way to learn about current research. | |||
This Week in Virology | |||
By Vincent Racaniello | |||
Ologies | |||
By Alie Ward | |||
5 stars! Great all around podcast made for a more general audience. There are many different episodes on scientific topics including Environmental Microbiology, Mathematical Biology, and much much more. This is a great podcast to explore different careers and listen to some amazing speakers. | |||
Overheard at National Geographic | |||
By National Geographic | |||
4 stars! Great podcast to hear about the many wonders of the world. It also has shorter episodes and is a great way to learn about the world. | |||
Journey to the Micro Cosmos | |||
3 stars! Short 10 minute episodes about cool microbes. | |||
== [[Waste Disposal]] == | |||
== Cambridge protocols == | |||
=== [[Storage buffer]] === | |||
=== [[transformation of R5(2)-mCh-FL-BST and ]] === | |||
=== [[expression]] === | |||
=== [[lysis and immobilization]] === | |||
== Detailed Lab Task Descriptions == | |||
=== [[Serological Pipetes]] === | |||
=== [[Media]] === | |||
=== [[Medical Waste]] === | |||
=== [[Tips/Tubes]] === | |||
=== [[Glassware (no 50 mL flasks)]] === | |||
=== [[Just Flasks]] === | |||
=== [[Water/Ethanol]] === | |||
=== [[Balance/Microwave/Gel Box/Virkon]] === | |||
==[[Bio320 Microbe Species Wikipedia Pages]]== | |||
== Getting started with MediaWiki == | |||
Consult the [https://www.mediawiki.org/wiki/Special:MyLanguage/Help:Contents User's Guide] for information on using the wiki software. | Consult the [https://www.mediawiki.org/wiki/Special:MyLanguage/Help:Contents User's Guide] for information on using the wiki software. | ||
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list] | * [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list] | ||
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ] | * [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ] | ||
* [https://lists.wikimedia.org/ | * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list] | ||
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language] | * [https://www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language] | ||
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki] | * [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki] |
Revision as of 13:10, 16 December 2022
Lab Floor Plan (with list of materials)
General microbiology protocols
Media Recipes
Reagent Recipes
Working with Antibiotics
Freezing -80 Stocks
Freezing Aliquots
Competition Assays
Generic PCR
Gradient PCR
Running DNA Gels
Protein Purification
Protein Sample Concentration
Cloning and gene manipulation
Commonly Used Plasmids
Plasmid Purification
Digest and Ligation
Gel Purification
Creating Competent E. coli Cells
Transformation
Transformation — non-competent E. coli
Gibson Assembly
Qubit dsDNA Broad Range Assay
Preparing Sanger Sequencing (Eurofins)
Preparing Plasmid Sequencing (plasmidsaurus)
Creating Lac- E. coli Mutants
Arabidopsis thaliana protocols
Creating Sterile Agar Plates
Sterile Seeding Protocol
Germination Protocol for ''Arabidopsis thaliana'' Seeds in Non-Sterile Experiments
Growth Stage Phenotype Definitions
Growth Conditions for ''Arabidopsis thaliana''
Measuring Light with HOBO Data Loggers
Inoculation of ''Arabidopsis thaliana'' with Microbes
Removal and DNA Extraction of Phyllosphere Microbes
ARISA
Measuring ''A. thaliana'' Phenotype using FIJI by Hand
DNeasy PowerSoil Protocol
Fiji Measurement
Making Boxes
Growing ''A. thaliana'' for Seed Harvest
Growing ''A. thaliana'' in Cut Pipet Tips
Streptococcus pneumoniae protocols
Dual Layer Assays
Streptococcus DNA Extraction
Streptococcus CRISPR-Cas9 Editing
Streptococcus Transformation
Streptococcus Growth Curve Protocol
Streptococcus Growth Curve and Cell Count in Liquid Media
Log Phase Growth Curve and Cell Count in Liquid Media
Streptococcus Bacteriocin (Dual Layer) Assays - Original
Streptococcus Bacteriocin (Dual Layer) Assays - Early Producer
Streptococcus Bacteriocin (Dual Layer) Assays - Light and Normal Target Lawns
Streptococcus Bacteriocin (Dual Layer) Assays - Finding Producer-Resistant Target Bacteria
Streptococcus Bacteriocin (Dual Layer) Assays - Finding Producer-Resistant Target Bacteria (6-well plate version)
Streptococcus suis protocols
Streptococcus suis Transformation
Measuring Absorbance in Streptococcus
Streptococcus DNA Extraction
Streptococcus Competence Induction
Peptide Synthesis
Peptide Cleavage
Mass Spectrometery
Plate Reader Assay and Growth Curve
Measuring Competence : Fixation and Flow Cytometry
Streptococcus mutans protocols
Streptococcus mutans Growth
Streptococcus mutans Transformation
Interactions Protocols
Zone of Inhibition Assay
Remote Molecular Biology
Effect of Laboratory Protocols on Student Learning
Interesting Podcasts to Listen to When Doing Lab Work!
This Week in Microbiology
By Vincent Racaniello
5 stars! Amazing podcast to learn all about different types of microbiology research! This podcast goes pretty in depth into different current scientific papers so it is a great way to learn about current research.
This Week in Virology By Vincent Racaniello
Ologies
By Alie Ward
5 stars! Great all around podcast made for a more general audience. There are many different episodes on scientific topics including Environmental Microbiology, Mathematical Biology, and much much more. This is a great podcast to explore different careers and listen to some amazing speakers.
Overheard at National Geographic By National Geographic
4 stars! Great podcast to hear about the many wonders of the world. It also has shorter episodes and is a great way to learn about the world.
Journey to the Micro Cosmos 3 stars! Short 10 minute episodes about cool microbes.
Waste Disposal
Cambridge protocols
Storage buffer
transformation of R5(2)-mCh-FL-BST and
expression
lysis and immobilization
Detailed Lab Task Descriptions
Serological Pipetes
Media
Medical Waste
Tips/Tubes
Glassware (no 50 mL flasks)
Just Flasks
Water/Ethanol
Balance/Microwave/Gel Box/Virkon
Bio320 Microbe Species Wikipedia Pages
Getting started with MediaWiki
Consult the User's Guide for information on using the wiki software.