Streptococcus Transformation: Difference between revisions

From Microbial Ecology and Evolution Lab Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1: Line 1:
= Using C+Y media=
= Generic Protocol =
== Reagents Needed ==
* Grow fresh colonies (1-2 days old -- use a significant number) in 3ml of media 'A'.
* C+Y pH 7.4
* Preheat a microcentrifuge tube of 270ul media 'B' to 37 degrees using the hot block.
* CSP-1 peptide (in the -80 freezer; 20ul aliquots of 100uM) or CSP-2 peptide (which we do not have). Talk to Eric if you are not working with a D39 derivative.
* Occasionally, check for growth to appropriate Absorbance. When the cells have grown enough:
** Add 2ul CSP-1 peptide to these tubes. (more than 100 ng/ml eventual final concentration. In aliquots in the -80 freezer; 20ul aliquots of 100uM. Talk to Eric if you are not working with a D39 derivative.)
** Add DNA to 1 ug/ml final concentration — so 300ng.
** Add 30ul of grown cells (a 1:10 dilution).
** Vortex; incubate at 37 degrees for 60 minutes using the hot block.
* Warm up 2.7ml TSB in a test tube for each transformation using the hot block.
* At the end of the 60 minute incubation, add all 300ul of the transformation to each TSB test tube.
* Incubate for 60 minutes (or longer) in the 37 degree, 5% CO2 incubator.
* Either:
## Pre-warm blood plates with appropriate antibiotics OR on a TSA plate with appropriate antibiotics. Label plates.
## Add 6-7 glass beads
## Plate 500ul of sample AND 25ul added catalase (if using a TSA plate), put onto the plate the same time as the bacteria
## Use beads to distribute.
##Allow plates to completely dry in hood.
** Or,
## During this second 60 minute incubation, change the hot block to 42 degrees and put in 2 empty test tubes per transformation.
## Melt and pipet 3.5ml TSB soft agar into each test tube.
## Warm up TSB plates with appropriate antibiotics by placing them in either 37 degree incubators. Move to the hood and label plates.
## After the second 60 minute incubation, add 10ul of catalase and 10ul of TCC to each soft agar tube. There's no need to add antibiotics to the soft agar.
## Add 2 x 750ul of the transformation to a soft agar tube (using a micropipettor, not a serological pipet), immediately vortex for 3-5 seconds and immediately pour onto a TSB plate. The agar will solidify quickly, so do this step one soft agar tube at a time.
## Repeat the above step with a second plate, so that all 3ml of the transformation is used.
## For (-), no DNA controls, feel free to only plate a total of 1.5ml onto a single TSB plate. Repeat for all transformations, one soft-agar tube at a time.
##Wait 3-5 minutes for all plates to solidify
* Incubate for 1-2 days in 37 degree, 5% CO2 incubator
 
 
{| class="wikitable" style="margin:auto"
|+ Specifics, by transformation media
|-
! Media 'A' (Growth Media) !! Media 'B' (Transformation Media) !! Grow to Absorbance
|-
| C+Y pH 7.4 || C+Y pH 7.4 || 0.52 Absorbance
|-
| CTM pH 6.8 || CTM pH 7.8 || 0.39 Absorbance
|-
| BHI pH 7.4 || BHI pH 7.4 + NaOH || 0.39 Absorbance
|-
| BHI pH 7.4 || BHI pH 6.6 || 0.05 Absorbance. With our Spectrometer, impossible. Use 0.13 Absorbance; dilute 4-fold with pre-warmed BHI pH 7.4; wait 30 minutes and then use.
|}
 


==C+Y Recipe==
[[File:C+Y_SpeumoCompetence.png]]


== Competence Protocol==
= Recipes =
*Grow in 3ml C+Y pH 7.4 until OD 0.4, which is 0.52 Absorbance
*Preheat a microcentrifuge tube of 270ul C+Y pH 7.4 to 37 degrees using the hot block.
*Add 2ul CSP-1 peptide to these tubes.
*Add DNA to 1 ug/ml final concentration — so 300ng.
*Add 30ul of grown cells (a 1:10 dilution).
*Vortex; incubate at 37 degrees for 60 minutes using the hot block.
*Warm up 2.7ml TSB in a test tube for each transformation using the hot block.
*At the end of the 60 minute incubation, add all 300ul of the transformation to each test tube.
*Incubate for 60 minutes in the 37 degree incubator.
*Plate 500ul (!!!) of sample on blood plates.


= Using CTM media (easier, not as effective)=
== C+Y Recipe ==
== Reagents Needed==
[[File:C+Y_SpeumoCompetence.png]]
* CTM (Complete Transformation Medium) pH 6.8
* CTM pH 7.8
* CSP-1 peptide (in the -80 freezer; 20ul aliquots of 100uM) or CSP-2 peptide (which we do not have). Talk to Eric if you are not working with a D39 derivative.


== Complete Transformation Medium==
== Complete Transformation Medium (CTM) ==
* 3g Tryptic Soy Broth
* 3g Tryptic Soy Broth
* 0.1g yeast extract
* 0.1g yeast extract
Line 31: Line 55:
* Add to a final concentration filter sterilized 1mM CaCl2 (found on chemical shelf), filter sterilized 0.2% BSA (Bovine Serum Albumin), and filter sterilized 1X trace mineral solution (found on chemical shelf)
* Add to a final concentration filter sterilized 1mM CaCl2 (found on chemical shelf), filter sterilized 0.2% BSA (Bovine Serum Albumin), and filter sterilized 1X trace mineral solution (found on chemical shelf)


== Competence Protocol==
# Freshly grow up single colonies on a blood TSA plate of the strain to be transformed.
# Select one colony and grow in 3ml CTM pH 6.8 until OD 0.3, which is 0.39 Absorbance
# Preheat a microcentrifuge tube of 270ul CTM pH 7.8 to 37 degrees using the hot block.
# Add CSP-1 peptide to this tube to at least 100 ng/ml eventual final concentration. We use 2ul of the CSP-1 aliquot, which brings the concentration to 228ng/ml.
# Add DNA to 1 ug/ml final concentration — so 300ng. If this is too much DNA, it might work with half of the amount — 150ng of DNA.
# Add 30ul of grown cells (a 1:10 dilution).
# Vortex
# Incubate at 37 degrees for 60 minutes using the hot block.
# During this time, warm up 2.7ml CTM pH 6.8 in a test tube for each transformation using the hot block.
# At the end of the 60 minute incubation, add all 300ul of the transformation to each test tube. Be sure to label which test tube is which.
# Incubate for 60 minutes in the 37 degree incubator.
# During this second 60 minute incubation, change the hot block to 42 degrees and put in 2 empty test tubes per transformation.
# Melt and pipet 3.5ml soft agar (either TSB or HTY) into each test tube.
# Warm up TSB plates with appropriate antibiotics by placing them in either 37 degree incubators. Move to the hood and label plates.
# After the second 60 minute incubation, add 10ul of catalase and 10ul of TCC to each soft agar tube. There's no need to add antibiotics to the soft agar.
# Add 2 x 750ul of the transformation to a soft agar tube (using a micropipettor, not a serological pipet), immediately vortex for 3-5 seconds and immediately pour onto a TSB plate. The agar will solidify quickly, so do this step one soft agar tube at a time.
# Repeat the above step, so that all 3ml of the transformation is used. For (-), no DNA controls, feel free to only plate a total of 1.5ml onto a single TSB plate. Repeat for all transformations, one soft-agar tube at a time.
# Wait 3-5 minutes for all plates to solidify 
# Incubate the plate overnight in the 37 degrees C 5% CO2 incubator.


= Competence Protocol with CRISPR =
= Competence Protocol with CRISPR =

Revision as of 14:25, 15 September 2023

Generic Protocol

  • Grow fresh colonies (1-2 days old -- use a significant number) in 3ml of media 'A'.
  • Preheat a microcentrifuge tube of 270ul media 'B' to 37 degrees using the hot block.
  • Occasionally, check for growth to appropriate Absorbance. When the cells have grown enough:
    • Add 2ul CSP-1 peptide to these tubes. (more than 100 ng/ml eventual final concentration. In aliquots in the -80 freezer; 20ul aliquots of 100uM. Talk to Eric if you are not working with a D39 derivative.)
    • Add DNA to 1 ug/ml final concentration — so 300ng.
    • Add 30ul of grown cells (a 1:10 dilution).
    • Vortex; incubate at 37 degrees for 60 minutes using the hot block.
  • Warm up 2.7ml TSB in a test tube for each transformation using the hot block.
  • At the end of the 60 minute incubation, add all 300ul of the transformation to each TSB test tube.
  • Incubate for 60 minutes (or longer) in the 37 degree, 5% CO2 incubator.
  • Either:
    1. Pre-warm blood plates with appropriate antibiotics OR on a TSA plate with appropriate antibiotics. Label plates.
    2. Add 6-7 glass beads
    3. Plate 500ul of sample AND 25ul added catalase (if using a TSA plate), put onto the plate the same time as the bacteria
    4. Use beads to distribute.
    5. Allow plates to completely dry in hood.
    • Or,
    1. During this second 60 minute incubation, change the hot block to 42 degrees and put in 2 empty test tubes per transformation.
    2. Melt and pipet 3.5ml TSB soft agar into each test tube.
    3. Warm up TSB plates with appropriate antibiotics by placing them in either 37 degree incubators. Move to the hood and label plates.
    4. After the second 60 minute incubation, add 10ul of catalase and 10ul of TCC to each soft agar tube. There's no need to add antibiotics to the soft agar.
    5. Add 2 x 750ul of the transformation to a soft agar tube (using a micropipettor, not a serological pipet), immediately vortex for 3-5 seconds and immediately pour onto a TSB plate. The agar will solidify quickly, so do this step one soft agar tube at a time.
    6. Repeat the above step with a second plate, so that all 3ml of the transformation is used.
    7. For (-), no DNA controls, feel free to only plate a total of 1.5ml onto a single TSB plate. Repeat for all transformations, one soft-agar tube at a time.
    8. Wait 3-5 minutes for all plates to solidify
  • Incubate for 1-2 days in 37 degree, 5% CO2 incubator


Specifics, by transformation media
Media 'A' (Growth Media) Media 'B' (Transformation Media) Grow to Absorbance
C+Y pH 7.4 C+Y pH 7.4 0.52 Absorbance
CTM pH 6.8 CTM pH 7.8 0.39 Absorbance
BHI pH 7.4 BHI pH 7.4 + NaOH 0.39 Absorbance
BHI pH 7.4 BHI pH 6.6 0.05 Absorbance. With our Spectrometer, impossible. Use 0.13 Absorbance; dilute 4-fold with pre-warmed BHI pH 7.4; wait 30 minutes and then use.


Recipes

C+Y Recipe

C+Y SpeumoCompetence.png

Complete Transformation Medium (CTM)

  • 3g Tryptic Soy Broth
  • 0.1g yeast extract
  • Fill up to 100ml MilliQ water and autoclave
  • Add to a final concentration filter sterilized 1mM CaCl2 (found on chemical shelf), filter sterilized 0.2% BSA (Bovine Serum Albumin), and filter sterilized 1X trace mineral solution (found on chemical shelf)


Competence Protocol with CRISPR

  • As above, but add the editing construct at a final concentration of 0.7 - 2.5 ug/ml (210ng - 750ng total DNA)
  • Incubate at 37 degrees using the hot block for 20 minutes.
  • Add the CRISPR targeting construct at a final concentration of 0.7 - 2.5 ug/ml (mirroring the first set of DNA), and vortex.
  • Incubate at 37 degrees using the hot block for 40 minutes.