Main Page: Difference between revisions

From Microbial Ecology and Evolution Lab Wiki
Jump to navigation Jump to search
PreDec2022>MSmith9
No edit summary
Tag: Reverted
Line 1: Line 1:
=== [[Lab Floor Plan (with list of materials)]] ===
<strong>MediaWiki has been installed.</strong>


== General microbiology protocols ==
Consult the [https://www.mediawiki.org/wiki/Special:MyLanguage/Help:Contents User's Guide] for information on using the wiki software.
===[[Media Recipes]]===
===[[Reagent Recipes]]===
===[[Working with Antibiotics]]===
===[[Freezing -80 Stocks]]===
===[[Freezing Aliquots]]===
===[[Competition Assays]]===
===[[Generic PCR]]===
===[[Gradient PCR]]===
===[[Running DNA Gels]]===
===[[Protein Purification]]===
 
===[[Protein Sample Concentration]]===
 
== Cloning and gene manipulation ==
===[[Commonly Used Plasmids]]===
===[[Plasmid Purification]]===
===[[Digest and Ligation]]===
===[[Gel Purification]]===
 
===[[Creating Competent E. coli Cells]]===
===[[Transformation]]===
===[[Transformation — non-competent E. coli]]===
===[[Gibson Assembly]]===
===[[Qubit dsDNA Broad Range Assay]]===
 
===[[Preparing Sanger Sequencing (Eurofins)]]===
===[[Preparing Plasmid Sequencing (plasmidsaurus)]]===
 
===[[Creating Lac- E. coli Mutants]]===
 
== ''Arabidopsis thaliana'' protocols ==
 
===[[Creating Sterile Agar Plates]]===
===[[Sterile Seeding Protocol]]===
===[[Germination Protocol for ''Arabidopsis thaliana'' Seeds in Non-Sterile Experiments]]===
===[[Growth Stage Phenotype Definitions]]===
===[[Growth Conditions for ''Arabidopsis thaliana'']]===
===[[Measuring Light with HOBO Data Loggers]]===
===[[Inoculation of ''Arabidopsis thaliana'' with Microbes]]===
===[[Removal and DNA Extraction of Phyllosphere Microbes]]===
===[[ARISA]]===
===[[Measuring ''A. thaliana'' Phenotype using FIJI by Hand]]===
===[[DNeasy PowerSoil Protocol]]===
===[[Fiji Measurement]]===
===[[Making Boxes]]===
===[[Growing ''A. thaliana'' for Seed Harvest]]===
===[[Growing ''A. thaliana'' in Cut Pipet Tips]]===
 
== ''Streptococcus pneumoniae'' protocols ==
===[[Dual Layer Assays]]===
===[[Streptococcus DNA Extraction]]===
===[[Streptococcus CRISPR-Cas9 Editing]]===
===[[Streptococcus Transformation]]===
===[[Streptococcus Growth Curve Protocol]]===
===[[Streptococcus Growth Curve and Cell Count in Liquid Media]]===
===[[Log Phase Growth Curve and Cell Count in Liquid Media]]===
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Original]]===
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Early Producer]]===
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Light and Normal Target Lawns]]===
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Finding Producer-Resistant Target Bacteria]]===
===[[Streptococcus Bacteriocin (Dual Layer) Assays - Finding Producer-Resistant Target Bacteria (6-well plate version)]]===
 
== ''Streptococcus suis'' protocols ==
===[[Streptococcus suis Transformation]]===
===[[Measuring Absorbance in Streptococcus]]===
===[[Streptococcus DNA Extraction]]===
===[[Streptococcus Competence Induction]]===
===[[Peptide Synthesis]]===
===[[Peptide Cleavage]]===
===[[Mass Spectrometery]]===
===[[Plate Reader Assay and Growth Curve]]===
===[[Measuring Competence : Fixation and Flow Cytometry]]===
 
== ''Streptococcus mutans'' protocols ==
===[[Streptococcus mutans Growth]]===
===[[Streptococcus mutans Transformation]]===
 
== [[Interactions Protocols]] ==
===[[Zone of Inhibition Assay]]===
 
== [[Remote Molecular Biology]] ==
 
 
== [[Effect of Laboratory Protocols on Student Learning]] ==
== Interesting Podcasts to Listen to When Doing Lab Work! ==


This Week in Microbiology
== Getting started ==
 
By Vincent Racaniello
 
5 stars! Amazing podcast to learn all about different types of microbiology research! This podcast goes pretty in depth into different current scientific papers so it is a great way to learn about current research.
 
This Week in Virology
By Vincent Racaniello
 
 
Ologies
By Alie Ward
5 stars! Great all around podcast made for a more general audience. There are many different episodes on scientific topics including Environmental Microbiology, Mathematical Biology, and much much more. This is a great podcast to explore different careers and listen to some amazing speakers.
 
Overheard at National Geographic
By National Geographic
 
4 stars! Great podcast to hear about the many wonders of the world. It also has shorter episodes and is a great way to learn about the world.
 
Journey to the Micro Cosmos
3 stars! Short 10 minute episodes about cool microbes.
 
== [[Waste Disposal]] ==
 
== Cambridge protocols ==
=== [[Storage buffer]] ===
=== [[transformation of R5(2)-mCh-FL-BST and ]] ===
=== [[expression]] ===
=== [[lysis and immobilization]] ===
 
== Detailed Lab Task Descriptions ==
=== [[Serological Pipetes]] ===
 
=== [[Media]] ===
=== [[Medical Waste]] ===
=== [[Tips/Tubes]] ===
=== [[Glassware (no 50 mL flasks)]] ===
=== [[Just Flasks]] ===
=== [[Water/Ethanol]] ===
=== [[Balance/Microwave/Gel Box/Virkon]] ===
 
 
==[[Bio320 Microbe Species Wikipedia Pages]]==
 
== Getting started with MediaWiki ==
Consult the [https://www.mediawiki.org/wiki/Special:MyLanguage/Help:Contents User's Guide] for information on using the wiki software.
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [https://lists.wikimedia.org/postorius/lists/mediawiki-announce.lists.wikimedia.org/ MediaWiki release mailing list]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki]

Revision as of 18:01, 15 December 2022

MediaWiki has been installed.

Consult the User's Guide for information on using the wiki software.

Getting started