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=== [[Storage buffer]] ===
=== [[Storage buffer]] ===
=== [[transformation]] ===
=== [[transformation]] ===
=== Transformation of R5(2)-mCh-FL-BST and R5(2)-mCh-H10-BST ===
==== protocol: ====
#Thaw BL21(DE3) Cells on ice
#Pipette 50 μL of cells into transformation tube
#Add 1 μL of protein encoded plasmids to transformation tube, flick 4-5 times
##170 ng/μl for R52-mCh-FL-BST
##Unknown concentration for R52-mCh-H10-BST
#Place mixture on ice for 30 mins.
##Begin to warm up LB Broth
#Heat shock at exactly 42°C for 10 secs.
##Used water bath
##Actual time: ~15 seconds
#Place on ice for 5 mins.
#Pipette 950 μL of room temperature LB Broth into mixture.
#Incubate at 37°C with 250 rpm for 60 mins.
##Warm selection plates to 37°C at the 30 min mark. (KAN resistance)
#Mix cells thoroughly and spread 100 μL of the mixture onto a plate
##One plate for either plasmid
##Leftover transformation mixtures stored in 4°C fridge
#Incubate overnight at 37°C
Results:
The selection plates showed no colonies.
Troubleshoot:
Increase heat shock time from 10 seconds to 45 seconds
Additional transformation with pUC19
Plate the transformed cells with non-selection Agar plates along side selection plates
Use heat block instead of water bath
Second Attempt - Protocol:
Thaw BL21(DE3) Cells on ice
Pipette 50 μL of cells into transformation tube
Add 1 μL of protein encoded plasmids to transformation tube, flick 4-5 times
170 ng/μl for R52-mCh-FL-BST
Unknown concentration for R52-mCh-H10-BST
163 pg/μl for pUC19
Place mixture on ice for 30 mins.
Begin to warm up LB Broth
Heat shock at exactly 42°C for 45 secs.
Used heat block instead of water bath
Place on ice for 5 mins.
Pipette 950 μL of room temperature LB Broth into mixture.
Incubate at 37°C with 225 rpm for 60 mins.
Warm selection plates to 37°C at the 30 min mark. (KAN resistance)
Mix cells thoroughly and spread 100 μL of the mixture onto a plate
One Agar plate w/ KAN for BST plasmids
One Agar plate w/ AMP for pUC19
One Agar plate w/o KAN for all 3 plasmids
Leftover transformation mixtures stored in 4°C fridge
Incubate overnight at 37°C
=== [[expression]] ===
=== [[expression]] ===
=== [[lysis and immobilization]] ===
=== [[lysis and immobilization]] ===

Revision as of 15:08, 4 September 2019

General microbiology protocols

Media Recipes

Reagent Recipes

Working with Antibiotics

Freezing -80 Stocks

Freezing Aliquots

Competition Assays

Generic PCR

Running DNA Gels

Cloning and gene manipulation

Commonly Used Plasmids

Plasmid Purification

Digest and Ligation

Creating Competent E. coli Cells

Transformation

Gibson Assembly

Phyllosphere protocols

Creating Sterile Agar Plates

Sterilization and Germination Protocol for ''Arabidopsis thaliana'' Seeds in Gnotobiotic Experiments

Germination Protocol for ''Arabidopsis thaliana'' Seeds in Non-Sterile Experiments

Growth Stage Phenotype Definitions

Growth Conditions for ''Arabidopsis thaliana''

Measuring Light with HOBO Data Loggers

Inoculation of ''Arabidopsis thaliana'' with Microbes

Removal and DNA Extraction of Phyllosphere Microbes

ARISA

Measuring ''A. thaliana'' Phenotype using FIJI

Streptococcus pneumoniae protocols

Dual Layer Assays

Streptococcus DNA Extraction

Streptococcus suis protocols

Streptococcus suis Transformation

Measuring Absorbance in Streptococcus

Streptococcus DNA Extraction

Streptococcus Competence Induction

Peptide Synthesis

Peptide Cleavage

Mass Spectrometery

Plate Reader Assay and Growth Curve

Measuring Competence : Fixation and Flow Cytometry

Remote Molecular Biology

Effect of Laboratory Protocols on Student Learning

Cambridge protocols

Storage buffer

transformation

Transformation of R5(2)-mCh-FL-BST and R5(2)-mCh-H10-BST

protocol:

  1. Thaw BL21(DE3) Cells on ice
  2. Pipette 50 μL of cells into transformation tube
  3. Add 1 μL of protein encoded plasmids to transformation tube, flick 4-5 times
    1. 170 ng/μl for R52-mCh-FL-BST
    2. Unknown concentration for R52-mCh-H10-BST
  4. Place mixture on ice for 30 mins.
    1. Begin to warm up LB Broth
  5. Heat shock at exactly 42°C for 10 secs.
    1. Used water bath
    2. Actual time: ~15 seconds
  6. Place on ice for 5 mins.
  7. Pipette 950 μL of room temperature LB Broth into mixture.
  8. Incubate at 37°C with 250 rpm for 60 mins.
    1. Warm selection plates to 37°C at the 30 min mark. (KAN resistance)
  9. Mix cells thoroughly and spread 100 μL of the mixture onto a plate
    1. One plate for either plasmid
    2. Leftover transformation mixtures stored in 4°C fridge
  10. Incubate overnight at 37°C

Results: The selection plates showed no colonies.

Troubleshoot: Increase heat shock time from 10 seconds to 45 seconds Additional transformation with pUC19 Plate the transformed cells with non-selection Agar plates along side selection plates Use heat block instead of water bath

Second Attempt - Protocol: Thaw BL21(DE3) Cells on ice Pipette 50 μL of cells into transformation tube Add 1 μL of protein encoded plasmids to transformation tube, flick 4-5 times 170 ng/μl for R52-mCh-FL-BST Unknown concentration for R52-mCh-H10-BST 163 pg/μl for pUC19 Place mixture on ice for 30 mins. Begin to warm up LB Broth Heat shock at exactly 42°C for 45 secs. Used heat block instead of water bath Place on ice for 5 mins. Pipette 950 μL of room temperature LB Broth into mixture. Incubate at 37°C with 225 rpm for 60 mins. Warm selection plates to 37°C at the 30 min mark. (KAN resistance) Mix cells thoroughly and spread 100 μL of the mixture onto a plate One Agar plate w/ KAN for BST plasmids One Agar plate w/ AMP for pUC19 One Agar plate w/o KAN for all 3 plasmids Leftover transformation mixtures stored in 4°C fridge Incubate overnight at 37°C

expression

lysis and immobilization

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