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3. Spray a beaker with ethanol, go get ice from the second floor imaging room (across from lab). | 3. Spray a beaker with ethanol, go get ice from the second floor imaging room (across from lab). | ||
4. Label 1 1.5mL microfuge | 4. Label 1 1.5mL microfuge tube for each of your experimental groups. (3 tubes for pUC18, pUC18-Empty, water 1 Control). From the -80 freezer: get enough competent cells to transfer 250 uL cells in each of the previously labeled experimental group tubes. Each freezer tube has 100uL cells. For negative control (water) you can use 100uL cells. | ||
5. Transfer 250uL of bacterial cells to each of your ligated and empty plasmid microfuge tubes. Transfer 100uL to the water tube. Spin for 5 minutes at 10,000 rpm at 4 degrees C. This will cause the bacterial cells to collect in a pellet at the bottom of your tube. | 5. Transfer 250uL of bacterial cells to each of your ligated and empty plasmid microfuge tubes. Transfer 100uL to the water tube. Spin for 5 minutes at 10,000 rpm at 4 degrees C. This will cause the bacterial cells to collect in a pellet at the bottom of your tube. | ||
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10. Incubate your microfuge tubes with cells in ‘floaties’ for one hour in the shaking water bath, set to 37°C. Make sure tubes are completely shut. | 10. Incubate your microfuge tubes with cells in ‘floaties’ for one hour in the shaking water bath, set to 37°C. Make sure tubes are completely shut. | ||
11. After 60 minutes, plate cells. If you so choose, you can divide the volume of ~250µL LB/cells/DNA mixture into a plate of 10µL, 100µL, and the rest of the volume in order to see which volume grows the optimal amount of cells. Spread plates with sterile beads, and then pour used beads into white container with funnel (by the sink). | 11. After 60 minutes, plate cells. If you so choose, you can divide the volume of ~250µL LB/cells/DNA mixture into a plate of 10µL, 100µL, and the rest of the volume in order to see which volume grows the optimal amount of cells. Spread plates with sterile beads, and then pour used beads into white container with funnel (by the sink). | ||
== Phyllosphere protocols == | == Phyllosphere protocols == |
Revision as of 09:46, 11 May 2019
Laboratory information
General microbiology protocols
Media Recipes
Reagent Recipes
Working with Antibiotics
Freezing -80 Stocks
Freezing Aliquots
Plasmid Purification
Creating Competent E. coli Cells
Competition Assays
Generic PCR
Running DNA Gels
Transformation
1. Turn on heat block to 42 degrees. 2. Turn on shaking water bath to 37 degrees. 3. Spray a beaker with ethanol, go get ice from the second floor imaging room (across from lab).
4. Label 1 1.5mL microfuge tube for each of your experimental groups. (3 tubes for pUC18, pUC18-Empty, water 1 Control). From the -80 freezer: get enough competent cells to transfer 250 uL cells in each of the previously labeled experimental group tubes. Each freezer tube has 100uL cells. For negative control (water) you can use 100uL cells.
5. Transfer 250uL of bacterial cells to each of your ligated and empty plasmid microfuge tubes. Transfer 100uL to the water tube. Spin for 5 minutes at 10,000 rpm at 4 degrees C. This will cause the bacterial cells to collect in a pellet at the bottom of your tube.
6. Remove the supernatant without disrupting the bacterial pellets. Add 25 µL of ice cold 1x TSS buffer/tube (10uL for the water tube) and resuspend the cells by flicking the tube gently, then place the tubes on ice. [TSS buffer is LB with detergents and salts which will permeabilize cell membranes, allowing the plasmid to enter the bacterial cells].
7. Add 10µL (25ng) of ligated plasmid DNA to the cells in ligated plasmid group. Also add 25ng of empty vector to the cells in the empty vector tubes. Add 10uL of sterile water to the negative control tubes. Place back on ice. As you add these small volumes, mix gently with tip of your pipette.
8. Allow the cells to incubate for 40 minutes on ice. Do not mix the tubes during this incubation period.
9. After 40 mins, carry the ice bucket to a heat block pre-heated to 42 degrees and heat shock the cells for exactly 45 seconds, then immediately return the tubes to ice for 2 minutes. Add 250 ml of room temperature LB to each of your tubes.
10. Incubate your microfuge tubes with cells in ‘floaties’ for one hour in the shaking water bath, set to 37°C. Make sure tubes are completely shut.
11. After 60 minutes, plate cells. If you so choose, you can divide the volume of ~250µL LB/cells/DNA mixture into a plate of 10µL, 100µL, and the rest of the volume in order to see which volume grows the optimal amount of cells. Spread plates with sterile beads, and then pour used beads into white container with funnel (by the sink).
Phyllosphere protocols
Creating Sterile Agar Plates
Sterilization and Germination Protocol for ''Arabidopsis thaliana'' Seeds in Gnotobiotic Experiments
Germination Protocol for ''Arabidopsis thaliana'' Seeds in Non-Sterile Experiments
Growth Stage Phenotype Definitions
Growth Conditions for ''Arabidopsis thaliana''
Measuring Light with HOBO Data Loggers
Inoculation of ''Arabidopsis thaliana'' with Microbes
Removal and DNA Extraction of Phyllosphere Microbes
ARISA
Streptococcus pneumoniae protocols
Dual Layer Assays
Streptococcus DNA Extraction
Streptococcus suis protocols
Measuring Absorbance in Streptococcus
Streptococcus DNA Extraction
Streptococcus Competence Induction
Peptide Synthesis
Peptide Cleavage
Mass Spectrometery
Plate Reader Assay and Growth Curve
Measuring Competence : Fixation and Flow Cytometry
Remote Molecular Biology
Effect of Laboratory Protocols on Student Learning
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